{ "_id": "6a102002acfb0bcc41c8b676", "Package": "shinyWGD", "Type": "Package", "Title": "'Shiny' Application for Whole Genome Duplication Analysis", "Version": "1.0.0", "Maintainer": "Jia Li ", "Authors@R": "c(\nperson(\"Jia\", \"Li\", email = \"li081766@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Zhen\", \"Li\", email = \"zhen.li@psb.vib-ugent.be\", role = \"ctb\"),\nperson(\"Arthur\", \"Zwaenepoel\", email = \"arthur.zwaenepoel@gmail.com\", role = \"ctb\"))", "Description": "Provides a comprehensive 'Shiny' application for analyzing\nWhole Genome Duplication ('WGD') events. This package provides\na user-friendly 'Shiny' web application for non-experienced\nresearchers to prepare input data and execute command lines for\nseveral well-known 'WGD' analysis tools, including 'wgd',\n'ksrates', 'i-ADHoRe', 'OrthoFinder', and 'Whale'. This package\nalso provides the source code for experienced researchers to\nadjust and install the package to their own server. Key\nFeatures 1) Input Data Preparation This package allows users to\nconveniently upload and format their data, making it compatible\nwith various 'WGD' analysis tools. 2) Command Line Generation\nThis package automatically generates the necessary command\nlines for selected 'WGD' analysis tools, reducing manual errors\nand saving time. 3) Visualization This package offers\ninteractive visualizations to explore and interpret 'WGD'\nresults, facilitating in-depth 'WGD' analysis. 4) Comparative\nGenomics Users can study and compare 'WGD' events across\ndifferent species, aiding in evolutionary and comparative\ngenomics studies. 5) User-Friendly Interface This 'Shiny' web\napplication provides an intuitive and accessible interface,\nmaking 'WGD' analysis accessible to researchers and\n'bioinformaticians' of all levels.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "Roxygen": "list(markdown = TRUE)", "SystemRequirements": "pandoc (>= 1.12.3), pandoc-citeproc", 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