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message: 'To cite package "shinyWGD" in publications use:'
type: software
license: GPL-3.0-only
title: 'shinyWGD: ''Shiny'' Application for Whole Genome Duplication Analysis'
version: 1.0.0
doi: 10.32614/CRAN.package.shinyWGD
abstract: Provides a comprehensive 'Shiny' application for analyzing Whole Genome
  Duplication ('WGD') events. This package provides a user-friendly 'Shiny' web application
  for non-experienced researchers to prepare input data and execute command lines
  for several well-known 'WGD' analysis tools, including 'wgd', 'ksrates', 'i-ADHoRe',
  'OrthoFinder', and 'Whale'. This package also provides the source code for experienced
  researchers to adjust and install the package to their own server. Key Features
  1) Input Data Preparation This package allows users to conveniently upload and format
  their data, making it compatible with various 'WGD' analysis tools. 2) Command Line
  Generation This package automatically generates the necessary command lines for
  selected 'WGD' analysis tools, reducing manual errors and saving time. 3) Visualization
  This package offers interactive visualizations to explore and interpret 'WGD' results,
  facilitating in-depth 'WGD' analysis. 4) Comparative Genomics Users can study and
  compare 'WGD' events across different species, aiding in evolutionary and comparative
  genomics studies. 5) User-Friendly Interface This 'Shiny' web application provides
  an intuitive and accessible interface, making 'WGD' analysis accessible to researchers
  and 'bioinformaticians' of all levels.
authors:
- family-names: Li
  given-names: Jia
  email: li081766@gmail.com
repository: https://li081766.r-universe.dev
commit: 8661a79cdd31b435708e903a3e170313d7e56a17
contact:
- family-names: Li
  given-names: Jia
  email: li081766@gmail.com